PhyloDraw is a drawing tool for creating phylogenetic trees. PHYLIP is a free package of programs for inferring phylogenies. MEGA is an integrated tool for automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, and testing evolutionary hypotheses. The software is free and part of the EMBOSS distribution. HYPHY was designed with maximum flexibility in mind and to that end it incorporates a simple high level programming It intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses. GeneTree is an experimental program for comparing gene and species trees.Ī profile hidden Markov model that can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus. GeneDoc does sequence alignment editing and shading, as well as secondary structure shading and super family group support.
The FastA program has been developed by Pearson & Lipman (1988) and is useful to find all protein sequences of a database such as Swiss-Prot, that are homologous to a given sequence.įreeware program for construction and bootstrap (and jackknife) analysis of phylogenetic trees from binary data (RAPD, RFLP, AFLP etc.)
It is a general-purpose package for DNA and protein sequence phylogenies, and also gene frequencies.ĮMBOSS, The European Molecular Biology Open Source Software Suite, is a package of high-quality FREE Open Source software for sequence analysis. Infer RNA secondary structure using the comparative method.
Performs translations, phylogenetic analysis, clustalw alignments, ABI trace analysis, RNA comparative analysis and BLAST searches.īLAST 2.0, (Basic Local Alignment Search Tool), provides a method for rapid searching of nucleotide and protein databases. BioEdit is a full integrated sequence/alignment editor.
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